PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989421.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 623aa    MW: 69644.1 Da    PI: 7.5829
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.8e-23159260199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L  gD v+F   + ++
  XP_024989421.1 159 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSGFVNKKKLVCGDAVLFL--RGDD 250
                     99****************************963.3445679************************************************..3378 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     + l+++++r+
  XP_024989421.1 251 GILRLGIRRA 260
                     8889999885 PP
2Auxin_resp110.81.3e-36283364182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +++++ +ks+F+v+YnPr + seF+v++++++k l++k+ +GmRf m+f+ted+ err++G+++g+sd+dpv+Wp+SkWr+L
  XP_024989421.1 283 VVNSIYQKSIFNVCYNPRGGLSEFIVPYHQFRKRLTNKFLPGMRFNMRFDTEDAVERRCTGIITGISDMDPVKWPGSKWRCL 364
                     578999***************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    
MMMCGLIDLN TINDDTDAVA TSSSDSYASV AVSPAPDLKT VSSSPVLCCL ELWHACAGPL  60
ISLPRKGNAV VYFPQGHLEQ QRVHGSPAIG GFNITPHVFC RVIDVKLHAE AGSDDVFAQV  120
SLIPDIKLEK KFGEGGNETE VEEDENDGLH EKSSTPHMFC KTLTASDTST HGGFSVPRRA  180
AEDCFPPLDY KQQRPSQELV AKDLHGTEWK FRHIYRGQPR RHLLTTGWSG FVNKKKLVCG  240
DAVLFLRGDD GILRLGIRRA AQMKTPAGFP ATCGQQLNDF TAVVNSIYQK SIFNVCYNPR  300
GGLSEFIVPY HQFRKRLTNK FLPGMRFNMR FDTEDAVERR CTGIITGISD MDPVKWPGSK  360
WRCLMVRWDS VEVTKQNRVS PWEIERCNSV SGASSISSPI SKRMRTGFPT IRPDFQFPKD  420
GAEGALDFEK STRFQKVLQG QEIFSYKNDS YDHCPSRIIG PCWEAKNSML TNYLRNLIGI  480
DCDGTLRMNQ VLQGQEVPSE PQYPRAYNNS MHLSPFMQQP SSVLPFHNAI RQAPYFHPGC  540
VTDNLETPDF GRVYSRLSSD PLKEPVSTCE SNCKVFGFSL TEGTSQRTSV YAKNSCMLVN  600
EQEEMHPKRA IVEGKVVSMY ALG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-162ARF family protein