PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989420.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 636aa MW: 71503.4 Da PI: 7.684

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989420.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.9	1.9e-23	159	260	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L gD v+F + ++ XP_024989420.1 159 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSGFVNKKKLVCGDAVLFL--RGDD 250 99**************************963.3445679**********************************************..3378 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 + l+++++r+ XP_024989420.1 251 GILRLGIRRA 260 8889999885 PP
2	Auxin_resp	65.5	1.8e-22	283	341	1	59
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl 59 +++++ +ks+F+v+YnPr + seF+v++++++k l++k+ +GmRf m+f+ted+ err+ XP_024989420.1 283 VVNSIYQKSIFNVCYNPRGGLSEFIVPYHQFRKRLTNKFLPGMRFNMRFDTEDAVERRF 341 578999***************************************************98 PP
3	Auxin_resp	29.5	3.3e-11	382	406	58	82
Auxin_resp 58 rlsGtvvgvsdldpvrWpnSkWrsL 82 r++G+++g+sd+dpv+Wp+SkWr+L XP_024989420.1 382 RCTGIITGISDMDPVKWPGSKWRCL 406 789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MMMCGLIDLN TINDDTDAVA TSSSDSYASV AVSPAPDLKT VSSSPVLCCL ELWHACAGPL 60 ISLPRKGNAV VYFPQGHLEQ QRVHGSPAIG GFNITPHVFC RVIDVKLHAE AGSDDVFAQV 120 SLIPDIKLEK KFGEGGNETE VEEDENDGLH EKSSTPHMFC KTLTASDTST HGGFSVPRRA 180 AEDCFPPLDY KQQRPSQELV AKDLHGTEWK FRHIYRGQPR RHLLTTGWSG FVNKKKLVCG 240 DAVLFLRGDD GILRLGIRRA AQMKTPAGFP ATCGQQLNDF TAVVNSIYQK SIFNVCYNPR 300 GGLSEFIVPY HQFRKRLTNK FLPGMRFNMR FDTEDAVERR FDLYSLLKPF YHTRSELKFP 360 HRLDFDHFSL ICCHNLLCFF DRCTGIITGI SDMDPVKWPG SKWRCLMVRW DSVEVTKQNR 420 VSPWEIERCN SVSGASSISS PISKRMRTGF PTIRPDFQFP KDGAEGALDF EKSTRFQKVL 480 QGQEIFSYKN DSYDHCPSRI IGPCWEAKNS MLTNYLRNLI GIDCDGTLRM NQPSSVLPFH 540 NAIRQAPYFH PGCVTDNLET PDFGRVYSRL SSDPLKEPVS TCESNCKVFG FSLTEGTSQR 600 TSVYAKNSCM LVNEQEEMHP KRAIVEGKVV SMYALG

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MMMCGLIDLN TINDDTDAVA TSSSDSYASV AVSPAPDLKT VSSSPVLCCL ELWHACAGPL  60
ISLPRKGNAV VYFPQGHLEQ QRVHGSPAIG GFNITPHVFC RVIDVKLHAE AGSDDVFAQV  120
SLIPDIKLEK KFGEGGNETE VEEDENDGLH EKSSTPHMFC KTLTASDTST HGGFSVPRRA  180
AEDCFPPLDY KQQRPSQELV AKDLHGTEWK FRHIYRGQPR RHLLTTGWSG FVNKKKLVCG  240
DAVLFLRGDD GILRLGIRRA AQMKTPAGFP ATCGQQLNDF TAVVNSIYQK SIFNVCYNPR  300
GGLSEFIVPY HQFRKRLTNK FLPGMRFNMR FDTEDAVERR FDLYSLLKPF YHTRSELKFP  360
HRLDFDHFSL ICCHNLLCFF DRCTGIITGI SDMDPVKWPG SKWRCLMVRW DSVEVTKQNR  420
VSPWEIERCN SVSGASSISS PISKRMRTGF PTIRPDFQFP KDGAEGALDF EKSTRFQKVL  480
QGQEIFSYKN DSYDHCPSRI IGPCWEAKNS MLTNYLRNLI GIDCDGTLRM NQPSSVLPFH  540
NAIRQAPYFH PGCVTDNLET PDFGRVYSRL SSDPLKEPVS TCESNCKVFG FSLTEGTSQR  600
TSVYAKNSCM LVNEQEEMHP KRAIVEGKVV SMYALG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-153	ARF family protein