PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989418.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 645aa    MW: 72441.4 Da    PI: 7.8857
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23159260199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L  gD v+F   + ++
  XP_024989418.1 159 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSGFVNKKKLVCGDAVLFL--RGDD 250
                     99****************************963.3445679************************************************..3378 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     + l+++++r+
  XP_024989418.1 251 GILRLGIRRA 260
                     8889999885 PP
2Auxin_resp65.51.9e-22283341159
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl 59 
                     +++++ +ks+F+v+YnPr + seF+v++++++k l++k+ +GmRf m+f+ted+ err+
  XP_024989418.1 283 VVNSIYQKSIFNVCYNPRGGLSEFIVPYHQFRKRLTNKFLPGMRFNMRFDTEDAVERRF 341
                     578999***************************************************98 PP
3Auxin_resp29.43.4e-113824065882
      Auxin_resp  58 rlsGtvvgvsdldpvrWpnSkWrsL 82 
                     r++G+++g+sd+dpv+Wp+SkWr+L
  XP_024989418.1 382 RCTGIITGISDMDPVKWPGSKWRCL 406
                     789*********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    
MMMCGLIDLN TINDDTDAVA TSSSDSYASV AVSPAPDLKT VSSSPVLCCL ELWHACAGPL  60
ISLPRKGNAV VYFPQGHLEQ QRVHGSPAIG GFNITPHVFC RVIDVKLHAE AGSDDVFAQV  120
SLIPDIKLEK KFGEGGNETE VEEDENDGLH EKSSTPHMFC KTLTASDTST HGGFSVPRRA  180
AEDCFPPLDY KQQRPSQELV AKDLHGTEWK FRHIYRGQPR RHLLTTGWSG FVNKKKLVCG  240
DAVLFLRGDD GILRLGIRRA AQMKTPAGFP ATCGQQLNDF TAVVNSIYQK SIFNVCYNPR  300
GGLSEFIVPY HQFRKRLTNK FLPGMRFNMR FDTEDAVERR FDLYSLLKPF YHTRSELKFP  360
HRLDFDHFSL ICCHNLLCFF DRCTGIITGI SDMDPVKWPG SKWRCLMVRW DSVEVTKQNR  420
VSPWEIERCN SVSGASSISS PISKRMRTGF PTIRPDFQFP KDGAEGALDF EKSTRFQKVL  480
QGQEIFSYKN DSYDHCPSRI IGPCWEAKNS MLTNYLRNLI GIDCDGTLRM NQVLQGQEVP  540
SEPQYPRAYN NSMHLSPFMQ QPSSVLPFHN AIRQAPYFHP GCVTDNLETP DFGRVYSRLS  600
SDPLKEPVST CERRDASKKG DSGGKSCINV CLGLSVGRKE LMNGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-153ARF family protein