PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024989163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 29551.9 Da PI: 5.985 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.6 | 6.9e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd+ l+ ++ ++G +W+ +r g+ R++k+c++rw +yl XP_024989163.1 14 KGSWSREEDQMLISYISRYGIWNWSQMPRFAGLSRSGKSCRLRWMNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 47.8 | 3.3e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE++++ + + +lG++ W++Ia++++ gRt++++k++w+ + XP_024989163.1 67 RGNFSKEEEDIIFHSHLLLGNR-WAAIASRLP-GRTDNEIKNHWHAH 111 89********************.*********.***********976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MRTPTSDIKT GLKKGSWSRE EDQMLISYIS RYGIWNWSQM PRFAGLSRSG KSCRLRWMNY 60 LKPNIKRGNF SKEEEDIIFH SHLLLGNRWA AIASRLPGRT DNEIKNHWHA HLKKRLTDHN 120 MVPKTTNQND KRTSMTFKPD NVEEILQQPA NHNYDISESC LTFEDDIFSS SSSTTTSIEH 180 HQIDNRADYF DLGSPGTVDD LQYFWQQLCP FENLELENNH LDMLSNPIFQ DSFDDPNSPC 240 SFYISDYDII QGF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 2e-54 | MYB family protein |