PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989148.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 279aa MW: 31542.6 Da PI: 8.0612

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989148.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.2	3.5e-41	178	255	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+++ XP_024989148.1 178 RCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVITAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSSQ 255 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MLDYEWGNPS TIMLNGAVAV AVDEPTSQPD QSRHIFDQYS QSFNETTNTA YLNPNDFLHH 60 THNPNHHYLN NPTQTHPHFA SLYDPRAYGG DCAYPHESPS PLLSLEPEGT GNVNSHGQTG 120 YMLMPKSEPS GCAIDFTNNR IGLNLGGRTY FSSAEDDFVN RLYRRSRPLE AALVSSPRCQ 180 AEGCNADLTH AKHYHRRHKV CEFHSKASTV ITAGLTQRFC QQCSRFHLLS EFDNGKRSCR 240 KRLADHNRRR RKSSQNQDHS KSQSSSSDII SRYQSDSRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	1e-80	SBP family protein