PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989082.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HSF

Protein Properties

Length: 378aa MW: 43338.2 Da PI: 4.5286

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989082.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.9	4.3e-35	14	105	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F++k+ye+++d+++++++sws++++sf+v+++ ef+ ++Lp++Fkh+nf+SF+RQLn+YgF+k++ e weF+++ F +g+ +ll++ XP_024989082.1 14 FISKTYEMVDDPSTDSIVSWSQSNKSFIVWNPPEFSGELLPRFFKHNNFSSFIRQLNTYGFRKIDPEL---------WEFANEDFIRGQPHLLKN 99 9*************************************************************9877.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_024989082.1 100 IHRRKP 105 *985 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MNDAQTSSSS LPPFISKTYE MVDDPSTDSI VSWSQSNKSF IVWNPPEFSG ELLPRFFKHN 60 NFSSFIRQLN TYGFRKIDPE LWEFANEDFI RGQPHLLKNI HRRKPVHSHS IQNLSSNGAY 120 SNSSSPLTES EKLRYREKID ELHYEKELLS IEFHRHQQDQ DRIKLEARAL TDRLKHTGKV 180 QKDILCSLDE ILQKPALDLK FETQFAETND RKRRVSGETN NDQVCPFDLP IRETLTAESL 240 LALDTELVEH LESSLTLWEG ILKEVDEAFE QQKWRLELDD EAACCADSPE ICYSPMNIEI 300 GGGEIDMNSG ATEEEKDGNV VGVNDVFWEQ FLTENPGGSN VVEGDSKGLD EYGKFWWKMK 360 SVNNLADQLG QLTPAERT

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MNDAQTSSSS LPPFISKTYE MVDDPSTDSI VSWSQSNKSF IVWNPPEFSG ELLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE LWEFANEDFI RGQPHLLKNI HRRKPVHSHS IQNLSSNGAY  120
SNSSSPLTES EKLRYREKID ELHYEKELLS IEFHRHQQDQ DRIKLEARAL TDRLKHTGKV  180
QKDILCSLDE ILQKPALDLK FETQFAETND RKRRVSGETN NDQVCPFDLP IRETLTAESL  240
LALDTELVEH LESSLTLWEG ILKEVDEAFE QQKWRLELDD EAACCADSPE ICYSPMNIEI  300
GGGEIDMNSG ATEEEKDGNV VGVNDVFWEQ FLTENPGGSN VVEGDSKGLD EYGKFWWKMK  360
SVNNLADQLG QLTPAERT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	6e-95	HSF family protein