PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988550.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 336aa MW: 37084 Da PI: 7.8821

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988550.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.2	5.2e-31	155	213	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+++ gC ++k+ver+++dp +++itY+geH+h+ XP_024988550.1 155 SDLWSWRKYGQKPIKGSPYPRGYYKCSTSkGCLARKQVERNRSDPAMLIITYTGEHTHP 213 799*********************9988**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MDVDWDLQAV VRGCCSTVSS ATTTTTTTTA PTCPVDAYSQ PHSNFYGENF MGFFPDLFQP 60 RRDNSIEQFL NDLYNPIHLQ KPPPSPQSLP ISPLSVLGGL QDPPYHHHRK QFQGKQRSLG 120 ISRCTTSHTQ STTKFKKRKN QVKRVSQVPA EGSSSDLWSW RKYGQKPIKG SPYPRGYYKC 180 STSKGCLARK QVERNRSDPA MLIITYTGEH THPVPIQRNS LAGSSRNKPT ASASGDEDNR 240 NKPTSSPPVS PTASLSPAME KMDENERDDT DDDDNDFDVS GVVIDEDIFD GLDELVGSAS 300 GDRFSVHHAT SKTVPPFRWL SNNVATTTTT TAAGRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	5e-52	WRKY family protein