PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988428.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 401aa MW: 44637 Da PI: 6.1303

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16	2.2e-05	292	329	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_024988428.1 292 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKLL 329 677888999*****998.....8**************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MAKEIQAVVY GGSWWMSPRT AFNRLSCSSV ITDMENFGPC WPRDLMDIKS KSSDESLDGS 60 MVFQDIRRRP GGGATTMSPD SSFQMMATAF PDSPMTTNPD WNQDLLFRVQ EGLNTFSTSG 120 DGGSKAVTTA EHQRFTMDQP QSLNFITSSG DPATFPVSST SYDYPSSLLE TLYDSSPPPP 180 SQHPLYSFES NSNDFHFVQS LPSMCPKQQV SGHLHLTNSI PFWNASTSTL ESPSQFLPSS 240 YKEKQRSSNL TIQPHHQEIR DSGSTEKKSS GELPFKRPWL ETPSPLPTFK VRKEKLGDRI 300 TALQQLVSPF GKTDTASVLH EAIEYIKLLH DQVNILSAPY MKNGLTKQLQ QIHDHKVKDT 360 EGPKQDLRSL GLCLVPVSSM FPVAIETTSG FWTPNFEGSF I

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MAKEIQAVVY GGSWWMSPRT AFNRLSCSSV ITDMENFGPC WPRDLMDIKS KSSDESLDGS  60
MVFQDIRRRP GGGATTMSPD SSFQMMATAF PDSPMTTNPD WNQDLLFRVQ EGLNTFSTSG  120
DGGSKAVTTA EHQRFTMDQP QSLNFITSSG DPATFPVSST SYDYPSSLLE TLYDSSPPPP  180
SQHPLYSFES NSNDFHFVQS LPSMCPKQQV SGHLHLTNSI PFWNASTSTL ESPSQFLPSS  240
YKEKQRSSNL TIQPHHQEIR DSGSTEKKSS GELPFKRPWL ETPSPLPTFK VRKEKLGDRI  300
TALQQLVSPF GKTDTASVLH EAIEYIKLLH DQVNILSAPY MKNGLTKQLQ QIHDHKVKDT  360
EGPKQDLRSL GLCLVPVSSM FPVAIETTSG FWTPNFEGSF I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	5e-63	bHLH family protein