PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988362.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 428aa MW: 47452.8 Da PI: 8.0498

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988362.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.6	2.7e-41	143	220	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+akeyhr+h+vCe hsk+p+v+v gle+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ XP_024988362.1 143 RCQVEGCNLDLSSAKEYHRKHRVCESHSKCPKVVVGGLERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 220 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MEWNTKWDWE NHEIFSSKVM TSPKKLQSTN WGIGEGEEDI DGSFNLSGVV GGSGGSASDV 60 GNNSSAKSSI SASTESSFKE GMKVSKFSFE NFNTSSRKKE FAGGELNGTS PLLEASVSSG 120 EPFIGLKLGK KVKPSCQSTP IQRCQVEGCN LDLSSAKEYH RKHRVCESHS KCPKVVVGGL 180 ERRFCQQCSR FHSLSEFDEK KRSCRRRLSD HNARRRKPQQ ETIHFNPTNL SSSFYGGRQQ 240 LSFVLNNTPL VQTRPAVSST WENSSNSAYS IAKEKVDKSG VLDGLPHSLG MQLPSAVNMP 300 TIAFNRSVPS KGTRVEVLDQ GFKESLPPNV DALDIRRALS LLSNNSWGVY EPDLIALDHP 360 HQMHPDNPSG ILHQHGIQSV PLSSSDYWQA EQQSIDPHPH AKTSNAANTQ FQEFQLFNRF 420 YSNPMDEI

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MEWNTKWDWE NHEIFSSKVM TSPKKLQSTN WGIGEGEEDI DGSFNLSGVV GGSGGSASDV  60
GNNSSAKSSI SASTESSFKE GMKVSKFSFE NFNTSSRKKE FAGGELNGTS PLLEASVSSG  120
EPFIGLKLGK KVKPSCQSTP IQRCQVEGCN LDLSSAKEYH RKHRVCESHS KCPKVVVGGL  180
ERRFCQQCSR FHSLSEFDEK KRSCRRRLSD HNARRRKPQQ ETIHFNPTNL SSSFYGGRQQ  240
LSFVLNNTPL VQTRPAVSST WENSSNSAYS IAKEKVDKSG VLDGLPHSLG MQLPSAVNMP  300
TIAFNRSVPS KGTRVEVLDQ GFKESLPPNV DALDIRRALS LLSNNSWGVY EPDLIALDHP  360
HQMHPDNPSG ILHQHGIQSV PLSSSDYWQA EQQSIDPHPH AKTSNAANTQ FQEFQLFNRF  420
YSNPMDEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	217	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	4e-56	SBP family protein