PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024988361.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | SBP | ||||||||
Protein Properties | Length: 458aa MW: 50763.4 Da PI: 8.401 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.5 | 3e-41 | 173 | 250 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+akeyhr+h+vCe hsk+p+v+v gle+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ XP_024988361.1 173 RCQVEGCNLDLSSAKEYHRKHRVCESHSKCPKVVVGGLERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 250 6**************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence |
MEWNTKWDWE NHEIFSSKVM TSPKKLQSTN WGIGEGEEDI DGSFNLSGVV GGSGGSASDV 60 GNNSSAKSSI SASTESSFKE GMKVSKFSFE NFNTSSRKKE FAGGELNGTS PLLEASVSSG 120 EPFIGLKLGK RTYFENNFAR SNSKTSSFSD IPISSVSTGK KVKPSCQSTP IQRCQVEGCN 180 LDLSSAKEYH RKHRVCESHS KCPKVVVGGL ERRFCQQCSR FHSLSEFDEK KRSCRRRLSD 240 HNARRRKPQQ ETIHFNPTNL SSSFYGGRQQ LSFVLNNTPL VQTRPAVSST WENSSNSAYS 300 IAKEKVDKSG VLDGLPHSLG MQLPSAVNMP TIAFNRSVPS KGTRVEVLDQ GFKESLPPNV 360 DALDIRRALS LLSNNSWGVY EPDLIALDHP HQMHPDNPSG ILHQHGIQSV PLSSSDYWQA 420 EQQSIDPHPH AKTSNAANTQ FQEFQLFNRF YSNPMDEI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 230 | 247 | KKRSCRRRLSDHNARRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.1 | 9e-62 | SBP family protein |