PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988360.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 458aa MW: 50763.4 Da PI: 8.401

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988360.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.5	3e-41	173	250	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+akeyhr+h+vCe hsk+p+v+v gle+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ XP_024988360.1 173 RCQVEGCNLDLSSAKEYHRKHRVCESHSKCPKVVVGGLERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 250 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MEWNTKWDWE NHEIFSSKVM TSPKKLQSTN WGIGEGEEDI DGSFNLSGVV GGSGGSASDV 60 GNNSSAKSSI SASTESSFKE GMKVSKFSFE NFNTSSRKKE FAGGELNGTS PLLEASVSSG 120 EPFIGLKLGK RTYFENNFAR SNSKTSSFSD IPISSVSTGK KVKPSCQSTP IQRCQVEGCN 180 LDLSSAKEYH RKHRVCESHS KCPKVVVGGL ERRFCQQCSR FHSLSEFDEK KRSCRRRLSD 240 HNARRRKPQQ ETIHFNPTNL SSSFYGGRQQ LSFVLNNTPL VQTRPAVSST WENSSNSAYS 300 IAKEKVDKSG VLDGLPHSLG MQLPSAVNMP TIAFNRSVPS KGTRVEVLDQ GFKESLPPNV 360 DALDIRRALS LLSNNSWGVY EPDLIALDHP HQMHPDNPSG ILHQHGIQSV PLSSSDYWQA 420 EQQSIDPHPH AKTSNAANTQ FQEFQLFNRF YSNPMDEI

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MEWNTKWDWE NHEIFSSKVM TSPKKLQSTN WGIGEGEEDI DGSFNLSGVV GGSGGSASDV  60
GNNSSAKSSI SASTESSFKE GMKVSKFSFE NFNTSSRKKE FAGGELNGTS PLLEASVSSG  120
EPFIGLKLGK RTYFENNFAR SNSKTSSFSD IPISSVSTGK KVKPSCQSTP IQRCQVEGCN  180
LDLSSAKEYH RKHRVCESHS KCPKVVVGGL ERRFCQQCSR FHSLSEFDEK KRSCRRRLSD  240
HNARRRKPQQ ETIHFNPTNL SSSFYGGRQQ LSFVLNNTPL VQTRPAVSST WENSSNSAYS  300
IAKEKVDKSG VLDGLPHSLG MQLPSAVNMP TIAFNRSVPS KGTRVEVLDQ GFKESLPPNV  360
DALDIRRALS LLSNNSWGVY EPDLIALDHP HQMHPDNPSG ILHQHGIQSV PLSSSDYWQA  420
EQQSIDPHPH AKTSNAANTQ FQEFQLFNRF YSNPMDEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	247	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	9e-62	SBP family protein