PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988340.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 522aa    MW: 56971.6 Da    PI: 5.0578
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4571.2e-1391485201374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l+la++l+++   la +++ +m+++a+yf+eALa+r++r        l+p++ +++   +    +  f+e++P+lkf+h
  XP_024988340.1 148 LVHTLMACAEAVQQENLALAENLVKQAGMLAVSQAGAMRKVATYFVEALARRIYR--------LSPKPPQDSPAFQD-LLQMHFYETCPYLKFAH 233
                     689****************************************************........55555543333333.33345************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+ ++++ l+e+g++La++A++++v+fe++ +va++l+dle
  XP_024988340.1 234 FTANQAILEAFAGKKKVHVIDFSMKQGMQWPALMQALALRPGGPPTFRLTGIGPPSGDNTDHLQEVGWKLAQLADTIHVEFEYRGFVAESLADLE 328
                     ********************************************************99************************************* PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak........... 274
                     + +L+++++E++aVn+v++lh+ll++++++e+    vL++vk+++P++++vveqea+hn+  Flerf+e+l+yys+lfdsle++           
  XP_024988340.1 329 PAMLDLREDEVVAVNSVFELHQLLARPGAVEK----VLSAVKEMKPEILTVVEQEANHNGLVFLERFTESLHYYSTLFDSLESSgnggggvdgga 419
                     ********************************....*********************************************9999********** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                     ++++s++++ +++++lg++i+nvvaceg +r+erhetl +W++rl++aGF++v+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++r+L+
  XP_024988340.1 420 ISPASNQDKIMSEVYLGKQICNVVACEGPDRVERHETLTQWKSRLDSAGFEAVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRSLI 514
                     999******************************************************************************************** PP

            GRAS 369 svSaWr 374
                     ++SaW+
  XP_024988340.1 515 TTSAWK 520
                     *****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    
MKRNHIITSD VTGKAKKTMW DEEDAGVDEL LAVLGYKVKS SDMVDVAQKI EHLEGVLGND  60
DGLSLLASDS VHYNPSDLSS WLESMISELN PTIVDDLQAI PGNAIYPPTK KVKSSSSSAG  120
ASASSSYNPN PNPNPVVIVD SQENGIRLVH TLMACAEAVQ QENLALAENL VKQAGMLAVS  180
QAGAMRKVAT YFVEALARRI YRLSPKPPQD SPAFQDLLQM HFYETCPYLK FAHFTANQAI  240
LEAFAGKKKV HVIDFSMKQG MQWPALMQAL ALRPGGPPTF RLTGIGPPSG DNTDHLQEVG  300
WKLAQLADTI HVEFEYRGFV AESLADLEPA MLDLREDEVV AVNSVFELHQ LLARPGAVEK  360
VLSAVKEMKP EILTVVEQEA NHNGLVFLER FTESLHYYST LFDSLESSGN GGGGVDGGAI  420
SPASNQDKIM SEVYLGKQIC NVVACEGPDR VERHETLTQW KSRLDSAGFE AVHLGSNAFK  480
QASMLLALFA GGDGYRVEEN NGCLMLGWHT RSLITTSAWK IR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein