PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024988318.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27590.9 Da PI: 6.8643 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 1e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed l +++++G ++W++ ++ g+ R++k+c++rw +yl XP_024988318.1 14 KGAWSENEDNMLRAYIEEHGHKNWRKLPKLAGLSRCGKSCRLRWMNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.3e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T eE+e++++ + lG++ W+tIa++++ gR+++++k++w+++l XP_024988318.1 67 RGNYTDEEEEIIINSLNILGNK-WATIAAKLP-GRSDNEIKNYWHTHL 112 899*******************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MVRAPYLDKN GVRKGAWSEN EDNMLRAYIE EHGHKNWRKL PKLAGLSRCG KSCRLRWMNY 60 LRPNIKRGNY TDEEEEIIIN SLNILGNKWA TIAAKLPGRS DNEIKNYWHT HLRKRSKQRS 120 TVSHSETEIV QNPKCSKEKG VPQVSEKEYR DEVEILTAVL CSDSSSNANN QQSSSNSLEH 180 MASNGCSSQP PNGDPVGDFW SMEDDFFMAL MDSTNKFVSS SYGHDVILID DVLWPTMDFC 240 GL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 2e-49 | MYB family protein |