PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988296.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 301aa    MW: 34211.1 Da    PI: 5.9137
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988296.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ll+++++ +G g+W++ a+  g++Rt+k+c++rw++yl
   XP_024988296.1 15 RGPWTLEEDDLLIHYITCHGEGRWNSLAKSSGLRRTGKSCRLRWLNYL 62
                     89********************************************97 PP
2Myb_DNA-binding49.97.4e-1668111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
   XP_024988296.1  68 RGNLTPQEQLLILELHSKWGNR-WSKIAHQLP-GRTDNEIKNYWRT 111
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MGGSCNEASF DELRRGPWTL EEDDLLIHYI TCHGEGRWNS LAKSSGLRRT GKSCRLRWLN  60
YLKPDIKRGN LTPQEQLLIL ELHSKWGNRW SKIAHQLPGR TDNEIKNYWR TRVQKQARYL  120
KIDSNSKRFV ETLRRFWMPR LLEKVEQNSS STSSSSSTST SSTSTPEVDQ NNLSSILQAE  180
QTLIMASSSP QPTKMENPAS SSSLCSSDSM AMVFPENSNL QINPNGDSAT CYISSIQNND  240
CNYHVGINNF DMDLTPLDMH AVGPAGDMTV PEFQVAEADW MKDDDLASTF WSMDELWHFR  300
N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-79MYB family protein