PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987644.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 409aa MW: 45585.9 Da PI: 9.8898

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987644.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.1	3.2e-32	165	221	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgs++prsYY+Ct+++C vkkkvers d+++ ei+Y+geHnh+k XP_024987644.1 165 DGYNWRKYGQKQVKGSDYPRSYYKCTHPNCLVKKKVERSI-DGEIAEIVYKGEHNHSK 221 9*************************************.*************85 PP
2	WRKY	106.1	1.8e-33	345	402	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+vkg+++prsYYrCt +C+v+k+ver+++dp+v+++tYeg+Hnhe XP_024987644.1 345 SDGFRWRKYGQKVVKGNPYPRSYYRCTGVKCNVRKHVERASDDPSVFITTYEGKHNHE 402 7********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MELQEAERTV IAKPVASRPT ISNFRSFSEL LAGATNGSPL LEPTITAIRP KTVRFKHVTN 60 SQPVETVSSQ AQLDRTQASH LSDKIVKSNH TSPLLYKPLA KTVSRTTISL LANMGTFNTS 120 REQALAASQS ENAKGINPPK LTPMKSGNDK RSQFHTNNSD RPSYDGYNWR KYGQKQVKGS 180 DYPRSYYKCT HPNCLVKKKV ERSIDGEIAE IVYKGEHNHS KPRLPRRHAF DGTSEGSNTQ 240 LPNNQLNNDN EGSEGGTGIK IDEVLGSSSH LTNLVKVQES YNHVSSEAVD ACMPTLDRFC 300 GVARVHDESA SKRRKSSSIL NEPYGEGLQQ PRIVVHDGTD SEAISDGFRW RKYGQKVVKG 360 NPYPRSYYRC TGVKCNVRKH VERASDDPSV FITTYEGKHN HEMPIKKSN

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MELQEAERTV IAKPVASRPT ISNFRSFSEL LAGATNGSPL LEPTITAIRP KTVRFKHVTN  60
SQPVETVSSQ AQLDRTQASH LSDKIVKSNH TSPLLYKPLA KTVSRTTISL LANMGTFNTS  120
REQALAASQS ENAKGINPPK LTPMKSGNDK RSQFHTNNSD RPSYDGYNWR KYGQKQVKGS  180
DYPRSYYKCT HPNCLVKKKV ERSIDGEIAE IVYKGEHNHS KPRLPRRHAF DGTSEGSNTQ  240
LPNNQLNNDN EGSEGGTGIK IDEVLGSSSH LTNLVKVQES YNHVSSEAVD ACMPTLDRFC  300
GVARVHDESA SKRRKSSSIL NEPYGEGLQQ PRIVVHDGTD SEAISDGFRW RKYGQKVVKG  360
NPYPRSYYRC TGVKCNVRKH VERASDDPSV FITTYEGKHN HEMPIKKSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37260.1	6e-96	WRKY family protein