PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987494.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 238aa    MW: 27427.2 Da    PI: 9.872
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.81.2e-50141381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yL++kv++ +l++ ++i+evd++k++PwdLp  +   ++e +fFs+r+ ky++g+r+nr+t sgyWkatg dk+++s 
  XP_024987494.1  14 LPPGFRFHPTDEELVVQYLNRKVHSFPLPA-SIIPEVDVCKSDPWDLPGDL---QQERFFFSSREVKYPNGNRSNRSTLSGYWKATGLDKQIVSW 104
                     79****************************.89***************554...5699**********************************997 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kktLvfykg+ p+g++tdW+mheyrl
  XP_024987494.1 105 rNKQVVGMKKTLVFYKGKPPSGRRTDWIMHEYRL 138
                     58888***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MVLKEMDNFG VLRLPPGFRF HPTDEELVVQ YLNRKVHSFP LPASIIPEVD VCKSDPWDLP  60
GDLQQERFFF SSREVKYPNG NRSNRSTLSG YWKATGLDKQ IVSWRNKQVV GMKKTLVFYK  120
GKPPSGRRTD WIMHEYRLAA ASPEAQGMEK WVVCRIFLKK RGKKEEEKQE KNVQKGKSNP  180
IIFYDFMASK RKGDLPLLSS GSSGITTNTN TNTNTSEDDE EEQSSSKCYD VSTFRRKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-83NAC family protein