PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986480.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 550aa    MW: 61908 Da    PI: 5.501
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986480.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS274.43.5e-841765482374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn..sseelaalkl..fsevsPil 91 
                     +e Ll  Ae vs++++e+ ++lL      + + g+p+qRl+++f +AL++++ar++ +++    + ++ s+ +  +++      +   ++  P++
  XP_024986480.1 176 IENLLLSAEKVSQRQFERSSKLLDWCDGSSYSFGNPIQRLVHHFSKALREKIARETGRISLHGlAKKHLSDIEgkMTTPNPT--IisVYQKLPFF 268
                     6788899***********************************************7777764431444444433332222223..25599999*** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     + +++ a qa+++ v+g+++vH+iD++i++G+Q   L+qaL+s+++ p  +l++T++g  + + ++++e+tgerL++fAe+++++f+fnv+++++
  XP_024986480.1 269 QAGQFSAVQALVDGVSGATKVHVIDLSIKNGVQNTILMQALSSQANCPIeHLKVTAIGT-NLNFRQNIEQTGERLKSFAESVNLSFSFNVVMVED 362
                     *******************************************9966555*********.5567999**************************** PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     + d++ + L+++p+EalaV ++++l ++ +++  les    ++k++k+++P+v+vv+e  a++ns++F++rf+eal +y alfdsle  ++re+e
  XP_024986480.1 363 MLDFKEDLLDLDPEEALAVYSSYALWSMISQQDRLES----LMKVIKNTNPRVMVVSEAAANLNSPNFVDRFIEALFFYGALFDSLEDCMGREDE 453
                     *****************************77777777....****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +r+  E ++l++ i + va+egaer+ rh +   Wr+ + ++G+++++ls +   qa+l+ +k + +   + e + ++l++gWk+ p+  +SaW+
  XP_024986480.1 454 NRAITESMYLNQGIWSNVAAEGAERVIRHVNIDVWRKFFARFGMNEIELSMSCLYQANLMAEKLScGSSCTFEMDGNCLIIGWKGSPIQCLSAWK 548
                     *****************************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    
MLPFDPSRFG RFHNKQTYDF SKKDVDNRQA GSFGKLPELW EEDDDHSGKK AKPTNGLLFS  60
TTAEYHQQQE PAKDFHNLDA LFLDTTPPFP SYQMQELADI ESQYTELIKP HPHPKTTETP  120
KAGGQKLSTD GVIRLGGERF VQSRSSTMND VSMPSHPYST SFSGLSDREV KDVELIENLL  180
LSAEKVSQRQ FERSSKLLDW CDGSSYSFGN PIQRLVHHFS KALREKIARE TGRISLHGLA  240
KKHLSDIEGK MTTPNPTIIS VYQKLPFFQA GQFSAVQALV DGVSGATKVH VIDLSIKNGV  300
QNTILMQALS SQANCPIEHL KVTAIGTNLN FRQNIEQTGE RLKSFAESVN LSFSFNVVMV  360
EDMLDFKEDL LDLDPEEALA VYSSYALWSM ISQQDRLESL MKVIKNTNPR VMVVSEAAAN  420
LNSPNFVDRF IEALFFYGAL FDSLEDCMGR EDENRAITES MYLNQGIWSN VAAEGAERVI  480
RHVNIDVWRK FFARFGMNEI ELSMSCLYQA NLMAEKLSCG SSCTFEMDGN CLIIGWKGSP  540
IQCLSAWKFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-46GRAS family protein