PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986479.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 303aa    MW: 34951.2 Da    PI: 6.3729
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT +Ede l+ +++  G g+Wk+ +++ g+ R++k+c++rw +yl
   XP_024986479.1 14 RGRWTSQEDETLITYIQANGEGSWKSLPKKAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding58.31.7e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E+e +v++++ +G++ W+ Ia++++ gRt++++k++w+++l
   XP_024986479.1  67 RGNFSQDEEEMIVKLHTTFGNR-WSMIASHLP-GRTDNEIKNHWNSHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MGRAPCCQKV GLKRGRWTSQ EDETLITYIQ ANGEGSWKSL PKKAGLLRCG KSCRLRWINY  60
LRGDLKRGNF SQDEEEMIVK LHTTFGNRWS MIASHLPGRT DNEIKNHWNS HLSRQIYRFI  120
TSKNDKTPTS IDIATLDNQK KPRVGRVSRC VAKKYNKNRV FKNSKPTPQF TTNKSSPPTT  180
VDGQGDHQNV GNCSISVRAN IKENLVYDIN GISDELGLNG LAVQDDELID INYFLESEDM  240
DSTKQIDIEY MKNMNEWNID DIEDDQNLLR LNRSETKMFD FDEINMYDEV DDMLVWLWEG  300
GNP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.17e-72MYB family protein