PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024986345.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 325aa MW: 36950.3 Da PI: 6.4298 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.7e-15 | 14 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G g+W+ ++++ + R++k+c++rw +yl XP_024986345.1 14 RGLWSPEEDEKLIRFITTHGYGCWSEVPEKAVsgLQRCGKSCRLRWINYL 63 788*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 7.1e-17 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E++l+++++ G++ W+ Ia++++ gRt++++k++w+++ XP_024986345.1 69 RGKFTPDEEKLIINLHSVVGNK-WAHIASHLP-GRTDNEIKNYWNSW 113 89********************.*********.************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence |
MGQHSCCNQQ KVKRGLWSPE EDEKLIRFIT THGYGCWSEV PEKAVSGLQR CGKSCRLRWI 60 NYLRPDIRRG KFTPDEEKLI INLHSVVGNK WAHIASHLPG RTDNEIKNYW NSWIKKKINR 120 KPSSTSMTTR RLSTSSTSMD QPHSDYGYNP THLSFLNQDL GINNIKQPIQ EQPVISSSSS 180 SLFMLDTSGS VLEGQNGDCI TQTEFFNDSM WQIHKNQIPE LSSQVLNFTT NNNGMYSSYL 240 PPLMENLESM VEGQNCHLTN GEGRECLIQK QHEFNGWVVD QTSQQCPSYL FWDDEHQEVQ 300 LGGEEIGVPS ASNMGPILSS YPTSL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 7e-90 | MYB family protein |