PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986102.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HSF

Protein Properties

Length: 486aa MW: 53306.5 Da PI: 4.6218

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986102.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.5	2.8e-35	38	129	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++d++++ ++sws+++nsf+v d+ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ XP_024986102.1 38 FLVKTYDMVDDPSTDMIVSWSATNNSFIVRDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKS 123 9******************999*************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i r+k XP_024986102.1 124 IVRRKP 129 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MESGSSNNGA AAAADGGGGG LLSNSPAPMP TVNAPPPFLV KTYDMVDDPS TDMIVSWSAT 60 NNSFIVRDPP EFARDLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL 120 LKSIVRRKPA SGHNQQLQQP PGQSPSAGAC VEVGKFGLEE EVERLKRDKN VLMQELVRLR 180 QQQQSTDNQM QSMVQRLQGM EQRQQQMMSF LAKAVNSPGF LAQFVQQQSE STKLITEGSK 240 KRRLKQDRVV PNGHSSSSDS SDGQIVKYQP MMNDSAKAML RQIIKLDIVS PPSEILNNSS 300 NVPSGGHNGS GVTIQEVLPP TSGQFYLPAV TGVQAAPLEA NSDVVTTKQF PDTSSLADGQ 360 ELPDISVLSN LQDMVADSYM HPETENGKFP LEIGNLSPGG DVEWDSNLLI EIEKYFAAND 420 PSWEQFLEPN PEVEMECGPM DEHMMQQQQE GGSVGISSLE NGSSPKGEVQ QLTQQMGQLS 480 SETKEG

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MESGSSNNGA AAAADGGGGG LLSNSPAPMP TVNAPPPFLV KTYDMVDDPS TDMIVSWSAT  60
NNSFIVRDPP EFARDLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL  120
LKSIVRRKPA SGHNQQLQQP PGQSPSAGAC VEVGKFGLEE EVERLKRDKN VLMQELVRLR  180
QQQQSTDNQM QSMVQRLQGM EQRQQQMMSF LAKAVNSPGF LAQFVQQQSE STKLITEGSK  240
KRRLKQDRVV PNGHSSSSDS SDGQIVKYQP MMNDSAKAML RQIIKLDIVS PPSEILNNSS  300
NVPSGGHNGS GVTIQEVLPP TSGQFYLPAV TGVQAAPLEA NSDVVTTKQF PDTSSLADGQ  360
ELPDISVLSN LQDMVADSYM HPETENGKFP LEIGNLSPGG DVEWDSNLLI EIEKYFAAND  420
PSWEQFLEPN PEVEMECGPM DEHMMQQQQE GGSVGISSLE NGSSPKGEVQ QLTQQMGQLS  480
SETKEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	245	KKRRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	1e-102	HSF family protein