PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986100.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 318aa    MW: 36453.6 Da    PI: 5.6098
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986100.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1609.2e-50211551128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     lppGfrFhPtdeel+ +yL++k+++++      +  ++i+++d+yk++Pw+Lp+++  ++kewyfF++rd+ky++g+r+nr+t +gyWkatg dk
  XP_024986100.1  21 LPPGFRFHPTDEELILHYLCRKTQSTSeivtgAQPPSIIADIDLYKHDPWELPEMALFGTKEWYFFTPRDRKYPNGSRPNRVTGNGYWKATGADK 115
                     79**********************99977655333358***************77667999********************************** PP

             NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++ k   + ++g+kk Lvfy+g+  kg kt+W+mheyrl
  XP_024986100.1 116 PIKPKsdPNMTIGIKKALVFYSGKGTKGIKTNWIMHEYRL 155
                     **998666677***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MRSPTKSVTK RVRDAESELN LPPGFRFHPT DEELILHYLC RKTQSTSEIV TGAQPPSIIA  60
DIDLYKHDPW ELPEMALFGT KEWYFFTPRD RKYPNGSRPN RVTGNGYWKA TGADKPIKPK  120
SDPNMTIGIK KALVFYSGKG TKGIKTNWIM HEYRLANSKP SPSKHTNATS LKLDDWVLCR  180
LYNKKNNPNE KIIQDDNHHL HPASPLDELR RSSCYNSDSL DSFEESDGEF SGNFGGDVTS  240
PSDLQHQSFT EVKGTSDQSS MEVMETLMKR EEQNDDGNDW LDSLSLEDLQ HCLEAMPPNQ  300
DFYEIPMIYN SNQQYFFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.12e-82NAC family protein