PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985422.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 278aa MW: 31311.8 Da PI: 4.7372

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.2	5.1e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l++ + G +W+++++ g++R++k+c++rw +yl XP_024985422.1 14 KGPWTAEEDNKLINFILTSGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.8	4.6e-17	70	111	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T+ E++l +d++++lG++ W++Ia++++ gRt++++k++w+++ XP_024985422.1 70 LTESEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111 69***************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MGRQPCCDKL GVKKGPWTAE EDNKLINFIL TSGQCCWRAV PKLAGLRRCG KSCRLRWTNY 60 LRPDLKRGLL TESEEQLVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLIKRG 120 IDPVTHEPLQ KEPQDTETSS SPGERSAESE NNNHSLPLES VNTTGSSEEN SSSSPPENCS 180 TLSDEPEKLF ESLCEDEKLL SYLLGDDEPP LVDTTSWDLP NNAHNFNNCT GSFTSWDDCA 240 TWLLDCQDFG VNDFGLDCFN QVEMSILDTL EVSSNQQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22680.1	2e-95	MYB family protein