PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985350.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 321aa    MW: 36319 Da    PI: 9.4182
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.41.1e-43101361128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+ +yL  kv+ +++++ + i+e+++y+++Pw+Lp k++ +e+e++fFs+rd+ky++g+r++r++ sg+Wkatgkdk+++++
  XP_024985350.1  10 LPPGFRFHPTDEELI-DYLFSKVKLRSIPA-SLIAEIELYSCDPWQLPIKASFGEDEMFFFSPRDRKYPNGSRPRRSAGSGFWKATGKDKPIFAS 102
                     79*************.9*************.89***************88888999*************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++++g+kk L+f+ g+  k +kt+W+m eyrl
  XP_024985350.1 103 sGSRKIGVKKALAFFIGNPAKNVKTSWTMTEYRL 136
                     78899***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MERGDQFLHL PPGFRFHPTD EELIDYLFSK VKLRSIPASL IAEIELYSCD PWQLPIKASF  60
GEDEMFFFSP RDRKYPNGSR PRRSAGSGFW KATGKDKPIF ASSGSRKIGV KKALAFFIGN  120
PAKNVKTSWT MTEYRLPESS SRSSRQNGSM RLDDWVLCRI RQKGNMSKNK SEVEKNPKNK  180
PTDGRLLTTL QELPSSYMVT KADMDLISDR RLKDFQLMAS ILADQNLPPM IENFSDELFQ  240
GTRTSSSSSS SSNNNNNNGL VYENGVFYKE NIPFILNENN VGNTDVLSRD MLTSNGSYDV  300
LDANHLDVVT KLFKDGTFKQ G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.15e-64NAC family protein