PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024984202.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 236aa MW: 26601.4 Da PI: 9.7644 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.2 | 9.2e-18 | 26 | 73 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+ rqvtfskRr+g++ KA+EL+vL++a++ + + s+ g+++ + XP_024984202.1 26 KIQAPNSRQVTFSKRRAGLFRKASELCVLTGAQIGIFVNSPGGRVFAF 73 5677788*************************************9887 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence |
MVTANVAGGV SMNKKTKGRK KIEIKKIQAP NSRQVTFSKR RAGLFRKASE LCVLTGAQIG 60 IFVNSPGGRV FAFGHPNADL LADRYLNQNN IDATSTTVQN YQPPLPAMHL FNFNEHYVKV 120 SRELEMEKKR RELIPAERSS GLQWYEEAVE GMEVEELEQY LSSLELLKKK VVMRADELTM 180 IKKTSTLLGS NLFDQVGWNN HIQTMDIPTT TTTTTTTTTV HHDGFNFHHS GEIGKF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-22 | M-type_MADS family protein |