PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984070.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Protein Properties

Length: 566aa MW: 63542.6 Da PI: 6.6896

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984070.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.1	1.2e-16	32	119	1	96
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv+ s+ l lp +fa + ++ +k +led+sg++W+vk+ + +g +++GW+ F a+gLk+gDf+vF+++ +s f vv XP_024984070.1 32 FFKVM--FGDEYSKVLFLPPRFAHSVrNM---VGKATRLEDLSGEKWTVKF--TMIDGFLAFEEGWNAFSTAHGLKVGDFLVFHYIMESHF--VV 117 55666..2233345699****777433...35689**********..******************************988888..66 PP EE CS B3 95 kv 96 + XP_024984070.1 118 LM 119 55 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MVHVAEVCAE CTQNCLLMHK KDKNPSPVAT TFFKVMFGDE YSKVLFLPPR FAHSVRNMVG 60 KATRLEDLSG EKWTVKFTMI DGFLAFEEGW NAFSTAHGLK VGDFLVFHYI MESHFVVLMY 120 GQSGCPEIQH FGFNQHQMED TRKKQRLVTD NTNSKPSNVN TNDHHISCEP SQSEHSDNEH 180 PEIRHSVGTQ HKEERIKKKE TAVQLPPSVN AKNTCNHLLA STSRPGPSVS GKELVRDENP 240 DNMVSETPTV KQFCLVDNDI EHVEDEHRST LINRFHLDRL PTQKRAIENL EDLFERLSSR 300 DSLHDLSIPE INPRESDDVR KNNVAFGGGG NATQINKSGK TLESRSEESR ENPKKSTIMP 360 SEATCNNSIK KRLRSSSLPI AWPKMAKKEP AGASETDTSG SRLHDAFCPS PSTGIFPKSI 420 AKPMKVTKKE LLSNECELKD TETGLLHNSP AEKDNDGFVK PEPVDYDEAL PPGPTNSLFS 480 AVMSSYHYLE LPEWVKLKKV ILLRNGGDLW PVLYQNQLGL KALTQSWQAF AKERGIQPGD 540 NCEFVLESEP NADLPCSVFR VHVTAK

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MVHVAEVCAE CTQNCLLMHK KDKNPSPVAT TFFKVMFGDE YSKVLFLPPR FAHSVRNMVG  60
KATRLEDLSG EKWTVKFTMI DGFLAFEEGW NAFSTAHGLK VGDFLVFHYI MESHFVVLMY  120
GQSGCPEIQH FGFNQHQMED TRKKQRLVTD NTNSKPSNVN TNDHHISCEP SQSEHSDNEH  180
PEIRHSVGTQ HKEERIKKKE TAVQLPPSVN AKNTCNHLLA STSRPGPSVS GKELVRDENP  240
DNMVSETPTV KQFCLVDNDI EHVEDEHRST LINRFHLDRL PTQKRAIENL EDLFERLSSR  300
DSLHDLSIPE INPRESDDVR KNNVAFGGGG NATQINKSGK TLESRSEESR ENPKKSTIMP  360
SEATCNNSIK KRLRSSSLPI AWPKMAKKEP AGASETDTSG SRLHDAFCPS PSTGIFPKSI  420
AKPMKVTKKE LLSNECELKD TETGLLHNSP AEKDNDGFVK PEPVDYDEAL PPGPTNSLFS  480
AVMSSYHYLE LPEWVKLKKV ILLRNGGDLW PVLYQNQLGL KALTQSWQAF AKERGIQPGD  540
NCEFVLESEP NADLPCSVFR VHVTAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18960.1	9e-12	B3 family protein