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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_024983936.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 303aa MW: 32614.9 Da PI: 4.9401 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 57.5 | 3.1e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++ +v++ ++fdfl ++v +
XP_024983936.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVGK 86
5789************************************************************************99865 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 303 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLRRGAK 60 TVNSLHLKHC VQSYNVFDFL REVVGKVPDY GHSEAGADDR NMAKRKKAAA DEVNDSDEEL 120 KRNRTNEAGH TSSSGRGRGR GRGRGRGRGR VAAEREPPQI EPESESCTLS FQQVSKQNLS 180 PQGAPDNHSE PKAEMAPDIS PSTGALNFDL NAGFDENTDK GSAASDGGAA PPPPPPPQAA 240 AAASSQPPQT APAPGGSSSA EPSEVANSEY PGWSVSEIDR ITIDPHLAQI NSKLDEDEDY 300 DEE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 136 | 145 | RGRGRGRGRG |
| 2 | 136 | 146 | RGRGRGRGRGR |
| 3 | 138 | 147 | RGRGRGRGRG |
| 4 | 138 | 148 | RGRGRGRGRGR |
| 5 | 140 | 149 | RGRGRGRGRG |
| 6 | 140 | 150 | RGRGRGRGRGR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 6e-72 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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