PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983900.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HSF

Protein Properties

Length: 389aa MW: 44213.6 Da PI: 4.9455

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983900.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.6	1.1e-34	66	158	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+++ ++d++l+ +isw +ng+sfvv+d+ efa+ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++ weF+h sF kgk+ ll++ XP_024983900.1 66 FLSKTFDFVDDPNLDPIISWGSNGQSFVVWDPIEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDTDR---------WEFAHGSFLKGKRYLLKN 151 9**************************************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+ks+ XP_024983900.1 152 IQRRKSN 158 **987 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MHPPSSSSLS PTASDSIPLV PSPFPISHQQ PVPNSVAFDA MMTTIGEREV VPQPLECLQG 60 IQIPPFLSKT FDFVDDPNLD PIISWGSNGQ SFVVWDPIEF ARIILPRNFK HNNFSSFVRQ 120 LNTYGFRKID TDRWEFAHGS FLKGKRYLLK NIQRRKSNQS TNDEANNQSI EAEVERLRKE 180 KTEMMQEVIE LQHEQRETHR YMESVNEKLK AAEHSQKQMV SFLGKVIGKP TFLSSLRAKK 240 EQQIRISAPR TARKFVEYQP HELIPLSNLD FGIETHDHDS KGKTMLDMQS EAGPEDYLSP 300 PADLVKGKKV LEPISGGIED ITVKQEDIWS MGFETNAETW TDLGNYELPE FGAGRGDLSE 360 LWNLGTSGGD NWQSEDISFD DEIGTQRYP

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MHPPSSSSLS PTASDSIPLV PSPFPISHQQ PVPNSVAFDA MMTTIGEREV VPQPLECLQG  60
IQIPPFLSKT FDFVDDPNLD PIISWGSNGQ SFVVWDPIEF ARIILPRNFK HNNFSSFVRQ  120
LNTYGFRKID TDRWEFAHGS FLKGKRYLLK NIQRRKSNQS TNDEANNQSI EAEVERLRKE  180
KTEMMQEVIE LQHEQRETHR YMESVNEKLK AAEHSQKQMV SFLGKVIGKP TFLSSLRAKK  240
EQQIRISAPR TARKFVEYQP HELIPLSNLD FGIETHDHDS KGKTMLDMQS EAGPEDYLSP  300
PADLVKGKKV LEPISGGIED ITVKQEDIWS MGFETNAETW TDLGNYELPE FGAGRGDLSE  360
LWNLGTSGGD NWQSEDISFD DEIGTQRYP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03720.1	2e-88	HSF family protein