PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024983644.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 299aa    MW: 33283.7 Da    PI: 8.0362
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024983644.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-18211244134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs+C  tkTp+WR+gp g+ktLCnaCG++yr+ +
  XP_024983644.1 211 CSHCEITKTPQWREGPMGPKTLCNACGVRYRSGR 244
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MESQDNGMCG VIDYNHEVYD EDCFGDILNI LDLPVENLEG DGLAEDWALK LGPIPSEVFR  60
EMLPPVSQIG GVVNDNGGGG GSADLLTECF VLNDETCQPK CQPILKSKTS KFQPKPQPPS  120
FPEGKKQYPM PRSFEAPSPD SVLERRTSGS TSKTVSFGTE IAIPVRSRTK RSQSGSTTNP  180
WSRSPLLIPL QKERKKRRNL FQQPVNETKK CSHCEITKTP QWREGPMGPK TLCNACGVRY  240
RSGRLFPEYR PAASPTFIPS VHSNSHRKVI EMRQKMDDDY VTKKVLSSNS RDTGLCSCE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171RSRTKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.25e-42GATA family protein