PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983489.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 360aa MW: 41720.4 Da PI: 5.1179

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983489.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.3	1.5e-21	72	166	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +W+++ v++Li+++ ++++ + +kk++W+ vsk m +g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ +++ XP_024983489.1 72 KWSDSRVRLLIQVVACVGDDGTLDGgssrksvclQKKGKWKTVSKIMVTKGCQVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPSLMESM 166 7************6666655322223455778********************************************669999999988887 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MNLMNRIDDE PSLGFMETKI LNPSTSYLSF GKGKADDNLN DHNISDEDEP SFMEDDNSNK 60 GRKGSSPWQR MKWSDSRVRL LIQVVACVGD DGTLDGGSSR KSVCLQKKGK WKTVSKIMVT 120 KGCQVSPQQC EDKFNDLNKR YKRLNDILGR GTSCRVVENP SLMESMPRLS AKTKEDVKKI 180 LNSKHLFYPE MCAYHNGQRI PNCTELDLMQ VRETPVIGQC SKENNRSSDE GEDSDGSDDD 240 DDDDSDHEDD EHKNGGEDGH LERGNSRFRD EINEVFEDPN NSKLQKKEWV KKRMLQLQEQ 300 RIGIEAEAFE MEKRRFKWQR FCDRKDRELE ISRLENERSM LENERMALQL KHREHVVESE

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MNLMNRIDDE PSLGFMETKI LNPSTSYLSF GKGKADDNLN DHNISDEDEP SFMEDDNSNK  60
GRKGSSPWQR MKWSDSRVRL LIQVVACVGD DGTLDGGSSR KSVCLQKKGK WKTVSKIMVT  120
KGCQVSPQQC EDKFNDLNKR YKRLNDILGR GTSCRVVENP SLMESMPRLS AKTKEDVKKI  180
LNSKHLFYPE MCAYHNGQRI PNCTELDLMQ VRETPVIGQC SKENNRSSDE GEDSDGSDDD  240
DDDDSDHEDD EHKNGGEDGH LERGNSRFRD EINEVFEDPN NSKLQKKEWV KKRMLQLQEQ  300
RIGIEAEAFE MEKRRFKWQR FCDRKDRELE ISRLENERSM LENERMALQL KHREHVVESE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	8e-71	Trihelix family protein