PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024983269.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 268aa    MW: 29532.2 Da    PI: 8.2305
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024983269.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.2e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv +++ +G g+W++ ++  g++R++k+c++rw +yl
   XP_024983269.1 14 KGAWTKEEDERLVTYINAHGEGSWRSLPKSAGLNRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding54.92.1e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++Ed+l+v ++  lG++ W+ Ia++++ gRt++++k++w+++
   XP_024983269.1  67 RGNFTPQEDQLIVSLHSVLGNK-WSMIASRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MVRSPCCEKD HTNKGAWTKE EDERLVTYIN AHGEGSWRSL PKSAGLNRCG KSCRLRWINY  60
LRPDLKRGNF TPQEDQLIVS LHSVLGNKWS MIASRLPGRT DNEIKNYWNT HIKRKLVVNS  120
TPGLDPQNHR PLLNHPTTTV NVVKTLEEPP VLPPEYSTQA VESSNSGGGG GVSSSTTSGL  180
STEEHIPVVN ITQPEINLEL SIGLPVVSDQ KTVAIAALPP SSSFSLYKEK IGDGCGGTAR  240
IGDEHGLLYP NEHSVSIGRF DFLSSRWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.16e-79MYB family protein