PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982798.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 346aa MW: 37575.9 Da PI: 8.3806

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982798.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.2	9.1e-19	13	58	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed+ l ++v+++G+++W++I++ ++ gR++k+c++rw + XP_024982798.1 13 KGPWSPDEDDMLQQLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58 79****************************.*********985 PP
2	Myb_DNA-binding	54.8	2.1e-17	67	109	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ XP_024982798.1 67 AFTPEEDETILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 109 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MANNSKKDLD RIKGPWSPDE DDMLQQLVEK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS 60 PQVEHRAFTP EEDETILRAH ARFGNKWATI ARLLSGRTDN AIKNHWNSTL KRKCSSMTNE 120 EFNEFAIQQP LLKRSVSAGS AVPVSGLCLN PGSPTGSDIS DSSVPALSSS HVYRPVARAC 180 VTAGPQIDVG MTSPPRPPPQ PPVNDPLTSL SLSLPGVDSI EEPTAAPMQL MPPSPPSPVV 240 PIPAMPLQQV PANRIQDLNL NNDGELMTTI PAAISSAMQQ LEVSPAEKAF EPFSAEFLSV 300 MQGMIRKEVR KYMRGLEQGG GGMCMQQASN GDGFGRVTRP GIKKID

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MANNSKKDLD RIKGPWSPDE DDMLQQLVEK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PQVEHRAFTP EEDETILRAH ARFGNKWATI ARLLSGRTDN AIKNHWNSTL KRKCSSMTNE  120
EFNEFAIQQP LLKRSVSAGS AVPVSGLCLN PGSPTGSDIS DSSVPALSSS HVYRPVARAC  180
VTAGPQIDVG MTSPPRPPPQ PPVNDPLTSL SLSLPGVDSI EEPTAAPMQL MPPSPPSPVV  240
PIPAMPLQQV PANRIQDLNL NNDGELMTTI PAAISSAMQQ LEVSPAEKAF EPFSAEFLSV  300
MQGMIRKEVR KYMRGLEQGG GGMCMQQASN GDGFGRVTRP GIKKID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	4e-85	MYB family protein