PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982324.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 389aa MW: 43084.8 Da PI: 6.6528

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982324.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.1e-12	323	368	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq XP_024982324.1 323 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 368 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MNSGLTRYRS APSSYFSNLI NSGTYEGEDI DPFFNPRVSS PETERILSRF MSSDGGGDNS 60 SAHQNLGQIR GNEPQFMDSM KQEQVTISSQ QQRQMMYQNH AQSQQVVHNN NPVVSGSGST 120 VVDPLMAMDP PTSLLRQSSS PAGFFENINI DDGYSMMRSM DKFQAANDSV PDSSFSSAKR 180 LKSRMTFSSG AHSSSRLLSR IPENEDKAMG MSAHNNGSFG DTHPKTAGYV TTFPGGSWDE 240 PTMLTDGFLK ELGENDQNSL SSLSSSGNRN DEGRIHAPTG LTHQLSLPTS SAELSVMEKL 300 LQFQDSVPLR SRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTADMLDLA 360 VDYIKELQKQ VETLSDHHSK CTCPHKQEL

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MNSGLTRYRS APSSYFSNLI NSGTYEGEDI DPFFNPRVSS PETERILSRF MSSDGGGDNS  60
SAHQNLGQIR GNEPQFMDSM KQEQVTISSQ QQRQMMYQNH AQSQQVVHNN NPVVSGSGST  120
VVDPLMAMDP PTSLLRQSSS PAGFFENINI DDGYSMMRSM DKFQAANDSV PDSSFSSAKR  180
LKSRMTFSSG AHSSSRLLSR IPENEDKAMG MSAHNNGSFG DTHPKTAGYV TTFPGGSWDE  240
PTMLTDGFLK ELGENDQNSL SSLSSSGNRN DEGRIHAPTG LTHQLSLPTS SAELSVMEKL  300
LQFQDSVPLR SRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTADMLDLA  360
VDYIKELQKQ VETLSDHHSK CTCPHKQEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	3e-58	bHLH family protein