PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982288.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 310aa MW: 32537.4 Da PI: 5.9121

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982288.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.2	8.1e-10	159	203	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L XP_024982288.1 159 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 203 99*********************55......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MANSNPSDGS ADDFFEQILG FPAYPAGATD PNLAGNEGSL GGSAAAANSM ILQLSSAGDG 60 SGHHHLASGI VGGGGGGGGG GGFHFPLGLS LEHGKGGFLK MDDASGSGKR FRDDVVDSRV 120 SSSGFQGQPM PNTVQTTPNP PTVRPTRVRA RRGQATDPHS IAERLRRERI AERIRALQEL 180 VPSVNKTDRA AMLDEIVDYV KFLRLQVKVL SMSRLGGASA VAPLVTDIPI SSVEEEAGEG 240 GRNQPAWEKW SNDGTERQVA KLMEENVGAA MQFLQSKALC IMPISLASAI YHTQPPDSTS 300 IVKPESEPPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	169	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-96	bHLH family protein