PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G02590.2 | ||||||||
Common Name | BHLH59, EN93, T10P11.13, UNE12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 310aa MW: 33105.4 Da PI: 6.313 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.1 | 7.7e-09 | 157 | 201 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++ + v+Y+k L AT4G02590.2 157 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 201 99***********************55......9**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-14 | 150 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.802 | 152 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-14 | 154 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-6 | 157 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-10 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE 60 GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG HGSGKRFSDD VVDNRCSSMK 120 PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP 180 TVNKTDRAAM IDEIVDYVKF LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG 240 RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS 300 VVKPENNPPQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 166 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.20028 | 0.0 | bud| flower| leaf| root| seed| vegetative tissue |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30679204 | 0.0 | ||||
Genevisible | 255497_at | 0.0 | ||||
Expression Atlas | AT4G02590 | - | ||||
AtGenExpress | AT4G02590 | - | ||||
ATTED-II | AT4G02590 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G02590.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G03040, AT1G31050, AT1G62990, AT1G77950 | |||||
IntAct | Search O22768 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G02590 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF367328 | 0.0 | AF367328.1 Arabidopsis thaliana AT4g02590/T10P11_13 mRNA, complete cds. | |||
GenBank | AK316748 | 0.0 | AK316748.1 Arabidopsis thaliana AT4G02590 mRNA, complete cds, clone: RAFL07-83-K16. | |||
GenBank | AY143951 | 0.0 | AY143951.1 Arabidopsis thaliana At4g02590/T10P11_13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001031577.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_567245.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | O22768 | 0.0 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A384KS03 | 0.0 | A0A384KS03_ARATH; UNE12 | ||||
TrEMBL | B9DFF4 | 0.0 | B9DFF4_ARATH; AT4G02590 protein | ||||
STRING | AT4G02590.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT4G02590.2 |
Entrez Gene | 828126 |
iHOP | AT4G02590 |
wikigenes | AT4G02590 |