PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024982178.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 28691.3 Da PI: 6.0576 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.1 | 6.8e-21 | 102 | 153 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +grW+AeIrdps r kr++lg+f+t+eeAa +++a+ l+g+ XP_024982178.1 102 KKYRGVRRRP-WGRWAAEIRDPS----RrKRVWLGTFDTPEEAATVYDNAAVMLKGH 153 59********.**********84....34**********************998886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence |
MEIRSPMYVR SGVKFSEHVV TTNKFVHDEP TTTTTAALVK QKVVRITLTD PYATDSSGDD 60 GGVVMVRRVK KHVFEINVNP PSSSNESRTR RRRVRRTGSV EKKYRGVRRR PWGRWAAEIR 120 DPSRRKRVWL GTFDTPEEAA TVYDNAAVML KGHNAVTNFP TVSVTETVIV ESKNPMVTTT 180 TGDEEPVNDV VLSPTSVLPF DDKLPPFDGL GYCDVDAFGF HIDVPINFPE FFVPEKYSGE 240 EFGDFDIDDF LVDVG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 111 | RRTGSVEKKYRGVRRRP |
2 | 108 | 127 | RRRPWGRWAAEIRDPSRRKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-31 | ERF family protein |