PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982177.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 275aa MW: 32300.6 Da PI: 7.6284

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982177.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.9	7.4e-25	34	116	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e++ ++ ++k++k lWe +s km+erg++rs++qCk+kw+nl +ryk +++e+++ + ++p+f++l+ XP_024982177.1 34 QWSVQETRDFLMIRAELDPTFMETKRNKLLWEVISTKMKERGYNRSAEQCKCKWKNLVTRYKGFETMEQEGM---RLQFPFFNELQ 116 7******************************************************************984...4468***98 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MDPSHLHHMS VSVDSGGGSG GGGGGGGGSD RFPQWSVQET RDFLMIRAEL DPTFMETKRN 60 KLLWEVISTK MKERGYNRSA EQCKCKWKNL VTRYKGFETM EQEGMRLQFP FFNELQAIFT 120 GRMQRMLWLE AEGVPSGSSK KRTTHNLSSD EEEGNDDSDV EKASINKKKK KIANIGKGNS 180 DSTMVNLKEI LEDLMKQQMQ IEMQWMKMYE AKEEERRMRE MEWRQTMEAL ENERVMFDRR 240 WREREEERRI REENRSEKRD ALITALLNKL RHEGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	3e-49	Trihelix family protein