PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024981963.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 346aa    MW: 38810.5 Da    PI: 10.1992
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024981963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-141412141596
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      + lp +f+++h    ++++ ++le+e+g++++  +i +++     l++GW+ F+ +++L++gD +vF+l++ ++f  ++ +
  XP_024981963.1 141 SMGLPTSFCKKHLP--KSTVSMVLENEDGNEYDAVFISERT----GLSGGWRAFALEHKLDDGDALVFELVEPTRF--KIYI 214
                     588*********53..36789***************54444....4***********************9986777..5544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MAEEITSNSY EEARKQQLLE NKKRFEDLGI LKISKSLSDL SKSEKQSKQR EVKPKIRNAL  60
VIEPRRSTRA RNPAPSYQDD LDIGLPSVRR RSNSNSSWAS YLARPLEEVK TASYEERVQA  120
IRSAEKVQSN LQSEYPSFVK SMGLPTSFCK KHLPKSTVSM VLENEDGNEY DAVFISERTG  180
LSGGWRAFAL EHKLDDGDAL VFELVEPTRF KIYIVKAASD DNMSNVEKEA AETKETSSAS  240
KKRKKTLDSS AENGKKLKDV EEEAAETKET STASKKRKKT LDSSAENGKE AAETKEISTA  300
PKRRKATLES STEKKGEKPK AGSHQTKKPK ENVTATRRST RKRNGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241245KKRKK
2241279KKRKKTLDSSAENGKKLKDVEEEAAETKETSTASKKRKK
3242280KKRKKTLDSSAENGKKLKDVEEEAAETKETSTASKKRKK
4242258KRKKTLDSSAENGKKLK
5275279KKRKK
6275313KKRKKTLDSSAENGKKLKDVEEEAAETKETSTASKKRKK
7276314KKRKKTLDSSAENGKKLKDVEEEAAETKETSTASKKRKK
8302330KRRKATLESSTEKKGEKPKAGSHQTKKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-57B3 family protein