PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981340.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 534aa MW: 61720.4 Da PI: 8.3115

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981340.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.9	4.9e-08	328	367	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE e+l++ +++ G++ Wk a+++g + + ++k+ w+ XP_024981340.1 328 AWTPEEIERLKEFHEKDGNK-WKMMAEELG--KHRFHVKDTWR 367 7*****************.******9..56777887776 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MDKIGEDAPV KMAKKSKKSK NKTNDMLDVG DDNCHVEDGG VPKKKGHKHK EKKRKSESNE 60 DQRDNGNLED DCNLQKKDKK RKRDSSENNH PSDKTQIEEN EQARDNEPAV EKDCDPKPRK 120 EKKRKHKHHS HESELENDGK EEDCQEDMFK KVDTKKKTTK TDDQNSDAEM NGITHEESGN 180 KGKKKSKSIE KNSEKQKAEG KEKTPKSVEN NTEKPKTKGK AKKVSFSGRV EVFPSSDTEP 240 EKQKMKGDGL VRGKRFTPEE DAIVKEAVLN YIEAHGLGDE GLKMVLNCKS HAGMKKCWQE 300 IATCIPYRPS SAVYYRAHIL FERAESRAWT PEEIERLKEF HEKDGNKWKM MAEELGKHRF 360 HVKDTWRRIK LKDLKAGKWS QEEYQSLYDL VNLDLQMKIT SEVKQSKHGM LRDNIPWTAI 420 SEKLSTRSDA TCCYKWYNQL TSSLVAEKKW CDADDYRLIG KLYELDAACV EDVDWDNLLE 480 HRPGDVCQKR WNQMVCHIGH QGSKPFSEQV DTLAKRYCPD LADIREAWDN KPVV

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MDKIGEDAPV KMAKKSKKSK NKTNDMLDVG DDNCHVEDGG VPKKKGHKHK EKKRKSESNE  60
DQRDNGNLED DCNLQKKDKK RKRDSSENNH PSDKTQIEEN EQARDNEPAV EKDCDPKPRK  120
EKKRKHKHHS HESELENDGK EEDCQEDMFK KVDTKKKTTK TDDQNSDAEM NGITHEESGN  180
KGKKKSKSIE KNSEKQKAEG KEKTPKSVEN NTEKPKTKGK AKKVSFSGRV EVFPSSDTEP  240
EKQKMKGDGL VRGKRFTPEE DAIVKEAVLN YIEAHGLGDE GLKMVLNCKS HAGMKKCWQE  300
IATCIPYRPS SAVYYRAHIL FERAESRAWT PEEIERLKEF HEKDGNKWKM MAEELGKHRF  360
HVKDTWRRIK LKDLKAGKWS QEEYQSLYDL VNLDLQMKIT SEVKQSKHGM LRDNIPWTAI  420
SEKLSTRSDA TCCYKWYNQL TSSLVAEKKW CDADDYRLIG KLYELDAACV EDVDWDNLLE  480
HRPGDVCQKR WNQMVCHIGH QGSKPFSEQV DTLAKRYCPD LADIREAWDN KPVV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	55	KKSKKSKNKTNDMLDVGDDNCHVEDGGVPKKKGHKHKEKKRK
2	52	82	KKRKSESNEDQRDNGNLEDDCNLQKKDKKRK
3	116	125	PKPRKEKKRK
4	119	160	KKSKKSKNKTNDMLDVGDDNCHVEDGGVPKKKGHKHKEKKRK
5	122	163	KKSKKSKNKTNDMLDVGDDNCHVEDGGVPKKKGHKHKEKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-123	MYB_related family protein