PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024981169.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29617.7 Da PI: 4.7327 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed +l+d+++++G ++W++ ++ g+ R++k+c++rw +yl XP_024981169.1 14 KGPWTHQEDRILIDYINLHGHPNWRALPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+e ++++++ +G++ W++Ia++++ gRt++++k+ w+++l XP_024981169.1 67 RGNFSREEEETIIQLHTAMGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence |
MVRAPCCEKM GLKKGPWTHQ EDRILIDYIN LHGHPNWRAL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF SREEEETIIQ LHTAMGNRWS AIAARLPGRT DNEIKNVWHT HLKKRVNPNH 120 TTEPTSNFEE KQEESKEEDE QTGARSSSSP LETNSTSSTD QTSYNQIDSP QPSCTEISSV 180 TTSTNDNVYN EEMILENFPE MDDEFWSEVF SGGNSDEFPL VHENIGQLQS GCGQESILHD 240 DMDFWFNVFT RGEELPQI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23250.1 | 5e-76 | MYB family protein |