PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024981021.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 376aa    MW: 42158.5 Da    PI: 8.6675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024981021.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.6e-06138161123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+Cp+Cg+ F  + +L++H+   H
  XP_024981021.1 138 YPCPNCGEIFQKPGLLEQHQAFkH 161
                     99******************8877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    
MANLPPVFTK FLSLLFILIH LGCFIIFPTS DHHRRRSRKP TSPLPLLRPT ATKLKPRKTL  60
SGSWAFIKQI FSSKPTSQTD GNSSIVHHVP SPASSTRSLR ISTINVSMAP LETTLLERGN  120
RPGSLTESDF FPLRNDIYPC PNCGEIFQKP GLLEQHQAFK HAVSELFDDD PGKNIVRIIF  180
QTGWPITGKN PMIYRVMKIH NSPKILTRFE EYREIVKSKA ARYGGVRRRD ERCIADGNEL  240
LRFHCATFLC DLGQNGNSSI CSHQYCSVCG IIRAGFSSKM DGISTLSTSW KGHVALPEDI  300
EEEFRFMHVK RAMLVCRVIA GRVGCDPEMG DKDDPGYDSL VGRETGGTES KLDDEDELIV  360
FNPRAVLPCF VIAYTV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-105C2H2 family protein