PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980875.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 488aa    MW: 55679.4 Da    PI: 4.3582
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS146.52.6e-451414882374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++ A+a+  g++ela+ +++ ++e  +p+g+p++R+a+ + +  + + +      y  l+ ++       +   a+++f+e++P+ +f+h+
  XP_024980875.1 141 QNLLMAYADAMGIGQKELADVIVKCIREKINPNGSPIERIAHNLFQPVEDQENA-----Y--LKLES-----ARNFNPAFRAFYEIFPYGRFAHF 223
                     689**************************************9988777766655.....3..22222.....345667899************** PP

            GRAS  97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     taN+aIl++v  + + vHi+Dfd+ +G+QWp+ ++a+a     + sl iT ++ ++++s+ e +++   L +fA+++g++++ + +    +e++ 
  XP_024980875.1 224 TANSAILDSVPINiNSVHIVDFDMREGTQWPPVIEAMART---KKSLTITSIKLEDHDSSFEGRKI--HLCNFARTFGLDLKVQEM---GMEEM- 309
                     ***********999************************74...568********776666666655..7*************9996...66666. PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk...vvvvveqe...adhnsesFlerflealeyysalfdsleaklpres 279
                     ++eL  + +E la n+++ l ++ + + ++  ++  +Lkl k++ +k   v+++ + e     +ns ++   f + l +y al++s+e ++p+  
  XP_024980875.1 310 VKEL--DGREFLAFNCMVGLPHMGRTRKTS--QIMGFLKLAKGILSKnegVITIGNGEggeRMRNSLDYTSFFDNYLVHYNALYESMEWGFPSYL 400
                     7777..679**************9444444..469********97765669999998853234499*************************9976 PP

            GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsv 370
                      e+r+ +E  ++       v+ e+ e  er+e     +  +e+ +GFk  ++s++  ++a  ++++ +   g rve ++++++vl W++ pLv v
  XP_024980875.1 401 nEARMAMETLFV----APYVSIEKWE--ERRE-----ETVFEKgFGFKGERMSKESWNEAMEMVKEGEsPYGIRVEgDNENEMVLEWRGVPLVRV 484
                     488888888855....5578899998..5555.....44555559*********************998889999966689999*********** PP

            GRAS 371 SaWr 374
                     SaWr
  XP_024980875.1 485 SAWR 488
                     ***8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    
MMLSELLLQP SYIHSDLDPY HPNLEFSSPF HSYFDSDLDF SSSLSTTPEN SSSISSVNLP  60
ILSDYPFSGY NHMEGLDDVC RWLCDDDDDG DDDDQEMEQI PEQMPSGNHH FWSPDFSQKS  120
SEAPESSTVL ETDDSMGTGI QNLLMAYADA MGIGQKELAD VIVKCIREKI NPNGSPIERI  180
AHNLFQPVED QENAYLKLES ARNFNPAFRA FYEIFPYGRF AHFTANSAIL DSVPININSV  240
HIVDFDMREG TQWPPVIEAM ARTKKSLTIT SIKLEDHDSS FEGRKIHLCN FARTFGLDLK  300
VQEMGMEEMV KELDGREFLA FNCMVGLPHM GRTRKTSQIM GFLKLAKGIL SKNEGVITIG  360
NGEGGERMRN SLDYTSFFDN YLVHYNALYE SMEWGFPSYL NEARMAMETL FVAPYVSIEK  420
WEERREETVF EKGFGFKGER MSKESWNEAM EMVKEGESPY GIRVEGDNEN EMVLEWRGVP  480
LVRVSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-23GRAS family protein