PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980487.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 365aa MW: 40042.7 Da PI: 7.5539

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980487.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.2	1.1e-55	19	147	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv + ++++ ++i+evd++k+ePw+Lp+++k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++s+ XP_024980487.1 19 LPPGFRFHPTDEELITCYLLRKVLDGSFTC-RAIAEVDLNKSEPWELPQRAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSS 112 79*************************9.89***********99999************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy+grapkgek++Wvmheyrle XP_024980487.1 113 kTSTLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 147 56777**************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MEFLTQLAFD SNSNADSHLP PGFRFHPTDE ELITCYLLRK VLDGSFTCRA IAEVDLNKSE 60 PWELPQRAKM GEKEWYFFSL RDRKYPTGLR TNRATEAGYW KATGKDREIY SSKTSTLVGM 120 KKTLVFYRGR APKGEKSNWV MHEYRLEGKF AYHFLSKTSK DEWVISRVFQ KTGVVAGAGG 180 NGSSVSGGGS GGGMKGFNGR MNSYHQEVNS SGSVSVSLPP LLDSSPYPSA ASPFAGDHDS 240 FSYDSNAASK EHVPCFSTAS ACSNFDNRSI FDFPPAPAAT FNHPTSMDYQ KNVGVSAFPI 300 LRAPQENLQL PFFYSSVAPP QPPIHSDGAM CSFGSSSGGN WLPAVTSATE NQKPGPTELD 360 CIWSF

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MEFLTQLAFD SNSNADSHLP PGFRFHPTDE ELITCYLLRK VLDGSFTCRA IAEVDLNKSE  60
PWELPQRAKM GEKEWYFFSL RDRKYPTGLR TNRATEAGYW KATGKDREIY SSKTSTLVGM  120
KKTLVFYRGR APKGEKSNWV MHEYRLEGKF AYHFLSKTSK DEWVISRVFQ KTGVVAGAGG  180
NGSSVSGGGS GGGMKGFNGR MNSYHQEVNS SGSVSVSLPP LLDSSPYPSA ASPFAGDHDS  240
FSYDSNAASK EHVPCFSTAS ACSNFDNRSI FDFPPAPAAT FNHPTSMDYQ KNVGVSAFPI  300
LRAPQENLQL PFFYSSVAPP QPPIHSDGAM CSFGSSSGGN WLPAVTSATE NQKPGPTELD  360
CIWSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53950.1	1e-104	NAC family protein