PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024980471.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | NAC | ||||||||
Protein Properties | Length: 200aa MW: 22884.4 Da PI: 4.8098 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 119.3 | 3.7e-37 | 9 | 128 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeelvv++L++k++ + + ++i+++d+y ++PwdL+ k+ e k+wy++s+r +nr+t +gyWka g d++++s+ XP_024980471.1 9 LPPGFRFCPTDEELVVHFLQRKASLLPYHP-DIIPDLDLYPYDPWDLDGKAMVEGKKWYYYSRRT--------QNRITVNGYWKAWGCDEQIMSS 94 79*************************998.89**************977777899******984........589*****************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+kk vf+ g+ap+g+kt+W+m+e+rl XP_024980471.1 95 sSSKRVGVKKYYVFHIGEAPEGVKTNWIMQEFRL 128 67788***************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MGDNNNVNLP PGFRFCPTDE ELVVHFLQRK ASLLPYHPDI IPDLDLYPYD PWDLDGKAMV 60 EGKKWYYYSR RTQNRITVNG YWKAWGCDEQ IMSSSSSKRV GVKKYYVFHI GEAPEGVKTN 120 WIMQEFRLSD GAASSSSSGS TGRSKRRSHS KIDFSKWVIC RVVEHSCDND NDDDDGGTEL 180 SCLDEVFLSL DDFDDISFPN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 149 | KRRSH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 7e-53 | NAC family protein |