PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980404.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 533aa    MW: 58536.5 Da    PI: 5.1824
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS415.93.7e-1271535181374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     lv++L++cAeav+ gdl+la  l+  l+ l  + ++g  + ++ ++f+ AL++r+++s +   +a+++  +      e+   ++ ++e++P+lkf
  XP_024980404.1 153 LVHVLMTCAEAVQRGDLSLAGLLIDDLQALlgRVNSGCGIGKVGSFFVDALSRRIVNSPE---NAVHADLS----AYENEILYHHYYEACPYLKF 240
                     689***************************999999********************9322...22333333....4566677889********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +h+taNqaIlea++g+++vH+iDf+++qGlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g +La++A++++v+f f+ ++a+rl+d
  XP_024980404.1 241 AHFTANQAILEAFDGQDCVHVIDFNLMQGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLKLAELARSVNVRFAFRGVAASRLDD 335
                     *********************************************************************************************** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++++L+v+p+Ea+aVn+++qlhrll  + s   ++d vL+ +++l+P+++ vveqe++hn+++Fl+rf+eal+yys++fdsl++    +++ ++
  XP_024980404.1 336 VKPWMLQVSPKEAIAVNSIMQLHRLLGPNSSRGPPIDLVLDWIRDLNPRILMVVEQESNHNQPEFLDRFTEALYYYSTMFDSLDVC---TAQPEK 427
                     **************************88888888**************************************************99...677778 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      + + +++rei+nvv+ceg  r+erhe l +Wr+rl +aGF p++l+++a kqa++ll  ++ +gy+vee++g+l+lgW++rpL+++SaW+
  XP_024980404.1 428 ALAELYIQREICNVVCCEGPVRVERHEPLVRWRDRLINAGFAPLHLGSNAFKQARMLLTLFSAEGYSVEENEGCLTLGWHSRPLIAASAWQ 518
                     888889************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    
MGPHDSSISA AAGSTSSSSS ACSTSTKPPQ PPDQMDHLLA GAGYKVRSND LHQVAERLQR  60
LETVMVKSSP VEISELVNDA VHYNPTDLAS WVDSLLTELN TNPPLSVPVP TDLSDPNAFP  120
ANINMYANHA PQVHGEFSQQ VVAPFEEDVS IQLVHVLMTC AEAVQRGDLS LAGLLIDDLQ  180
ALLGRVNSGC GIGKVGSFFV DALSRRIVNS PENAVHADLS AYENEILYHH YYEACPYLKF  240
AHFTANQAIL EAFDGQDCVH VIDFNLMQGL QWPALIQALA LRPGGPPLLR LTGIGPPSPD  300
GRDSLREIGL KLAELARSVN VRFAFRGVAA SRLDDVKPWM LQVSPKEAIA VNSIMQLHRL  360
LGPNSSRGPP IDLVLDWIRD LNPRILMVVE QESNHNQPEF LDRFTEALYY YSTMFDSLDV  420
CTAQPEKALA ELYIQREICN VVCCEGPVRV ERHEPLVRWR DRLINAGFAP LHLGSNAFKQ  480
ARMLLTLFSA EGYSVEENEG CLTLGWHSRP LIAASAWQAI PKPSTTIGPI NHP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-141GRAS family protein