PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979092.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 559aa    MW: 62994.7 Da    PI: 6.4633
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979092.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.68.2e-891775553374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.......sseelaalkl......f 84 
                      +Ll++Ae v  +++  a+++Lar     s dg+p++Rla y+ eAL++r+ +  ++++  ++ ++  +k+       ss e+ a+ +       
  XP_024979092.1 177 FQLLTAAEKVGRRQFDTASKFLARCGWVTSDDGSPVERLAYYLCEALQKRIEK-ETGIAVPMKLKKLGQKTknhvstgSSPEFLAMGTnptflaC 270
                     589*************************************************9.55666555544443333224444544444444335565558 PP

            GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                     +++ P+ ++ ++t  qaI + + ++++vH iD+ i  G+QW a++qaLa+R ++   ++iT+++  +  + +++ etg+rL+ fA++++++f f+
  XP_024979092.1 271 HQALPFNQVLQFTGIQAIIDQIGTSSKVHLIDMHIRSGVQWTAMMQALAERGSQIELMKITAFATTS--DVQQVGETGKRLEAFAKTFNLSFLFK 363
                     999**************************************************************54..9************************* PP

            GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                     +lv ++++++  e+++v+ gEa+aV ++  l ++  +++sle+    +++++++++P +vvv+e ea+hns+sF++rf+e+l +y alfd+lea 
  XP_024979092.1 364 ILVLSDITEVGKEQFEVQDGEAIAVYCQTILRTMITRPQSLEN----LMRTIRRINPLIVVVAEVEANHNSTSFVNRFTETLFFYGALFDCLEAC 454
                     ***********************************99999999....************************************************ PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                     ++r++ +r++vE + l++   n+va eg er+ r  ++++Wr+ + ++G+ ++ ls++ + qa+l+l++++     ++e++ ++l+ gWk+ pL 
  XP_024979092.1 455 MSRDNAHRAMVEGVHLAEGMHNMVADEGGERISRSVNMNTWRSFFARFGMIEIDLSDSCMYQANLVLQQFScASSCTLENNGKCLIVGWKGTPLH 549
                     ***********************************************************************9999******************** PP

            GRAS 369 svSaWr 374
                     s+S W+
  XP_024979092.1 550 SLSTWK 555
                     *****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    
MEERHQFPPH ELENMAAGEE LPPLEDVSHT MSNFRNRLGV RPFSIQVQDL EANHDHRPYS  60
VPEFNESIKE ISSSNSNSYS KPKSAYSELN PPAALELLSG YRNRFKHLEH QSSINEKTPD  120
CARKELSTVE IIELAAEKFI KFSTQRVNGY TMFTHPYGSS AFTSLTIDNT REVELIFQLL  180
TAAEKVGRRQ FDTASKFLAR CGWVTSDDGS PVERLAYYLC EALQKRIEKE TGIAVPMKLK  240
KLGQKTKNHV STGSSPEFLA MGTNPTFLAC HQALPFNQVL QFTGIQAIID QIGTSSKVHL  300
IDMHIRSGVQ WTAMMQALAE RGSQIELMKI TAFATTSDVQ QVGETGKRLE AFAKTFNLSF  360
LFKILVLSDI TEVGKEQFEV QDGEAIAVYC QTILRTMITR PQSLENLMRT IRRINPLIVV  420
VAEVEANHNS TSFVNRFTET LFFYGALFDC LEACMSRDNA HRAMVEGVHL AEGMHNMVAD  480
EGGERISRSV NMNTWRSFFA RFGMIEIDLS DSCMYQANLV LQQFSCASSC TLENNGKCLI  540
VGWKGTPLHS LSTWKFIQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-57GRAS family protein