PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979060.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WRKY
Protein Properties Length: 292aa    MW: 32338.6 Da    PI: 5.8691
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.6e-29139197259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+++  C +kk+ver+  dp ++++ Y+geH h+
  XP_024979060.1 139 NDLWAWRKYGQKPIKGSPYPRNYYRCSTTkACGAKKQVERNPMDPAIFIVSYSGEHIHP 197
                     79************************99889***************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MDGEWDLHAV VRSCSTAAVK ATTVDDYDDG RSYNLESLAS GNDGNPFVYP TFGENARNIS  60
GGLEDVYNAG CGRRQPLPPT TSAAAIDIDG EGFVHEQMPM LTDSHSFSMH AMNSQSTRTR  120
KRKNQEKMVF QLTQEELNND LWAWRKYGQK PIKGSPYPRN YYRCSTTKAC GAKKQVERNP  180
MDPAIFIVSY SGEHIHPRPT HRSSLAGSTR SNKFNTDNNK PPAVILEHPP CSSSSPASGS  240
SFSPTTSFKE DEGEINDEDE YNEDILINPN IVMNEEVLKR FRNLNGGGGG SF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-50WRKY family protein