PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978947.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 542aa MW: 60984 Da PI: 4.3665

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.7	5.4e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yL++k+ gk++++ ++i++vd+ykvePwdLp +++k+++ ewyfFs dkky +g+r+nrat++gyWk+tgkd++v+ XP_024978947.1 15 LAPGFRFHPTDEELVRYYLRRKICGKPFRF-DAISDVDVYKVEPWDLPglSRLKSRDLEWYFFSVLDKKYGNGSRTNRATDRGYWKTTGKDRSVY 108 579************************9.99***********6448888999*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++lvg+kktLv+++grapkge+t+Wvmheyrl XP_024978947.1 109 H-RSQLVGMKKTLVYHSGRAPKGERTNWVMHEYRL 142 .999***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MAVVLDSLPP APSSLAPGFR FHPTDEELVR YYLRRKICGK PFRFDAISDV DVYKVEPWDL 60 PGLSRLKSRD LEWYFFSVLD KKYGNGSRTN RATDRGYWKT TGKDRSVYHR SQLVGMKKTL 120 VYHSGRAPKG ERTNWVMHEY RLIDQELEKA GVVQDAFVLC RIFRKSGSGP KNGEQYGAPF 180 VEEEWEDDEL VMVPKQESAE ELRVDDDDDA YLDASDLEQI LGSDMPEEDG PLPLDYHQGN 240 DVSCADVSSE MIDETENFLV DGGEDQPQDD KEDGPKLFDL PVQNGMDPKS VKHEYIDDLK 300 NDVKTEPGLD MFBEFSIFNS TMDNLEYTFD SPTLENTNEE TLQVSEACQQ LFEGQNNDSW 360 QLFEGHNNNG ASSSNQDSAT GSVEGTHETS EAREQLSEGR SNNLAISSKQ EDADLPTEFA 420 YPFLKKASCM LGNISAPPAF ASAKYLASAS QASTSVRVTT GMIRIRDVSF TGSKMDWSLG 480 KHGQLNIVLS FGLEQNGDNN SANAHERKGD SRSWFYCLFV WIMVLSLSFK MSSLICPRSY 540 MS

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MAVVLDSLPP APSSLAPGFR FHPTDEELVR YYLRRKICGK PFRFDAISDV DVYKVEPWDL  60
PGLSRLKSRD LEWYFFSVLD KKYGNGSRTN RATDRGYWKT TGKDRSVYHR SQLVGMKKTL  120
VYHSGRAPKG ERTNWVMHEY RLIDQELEKA GVVQDAFVLC RIFRKSGSGP KNGEQYGAPF  180
VEEEWEDDEL VMVPKQESAE ELRVDDDDDA YLDASDLEQI LGSDMPEEDG PLPLDYHQGN  240
DVSCADVSSE MIDETENFLV DGGEDQPQDD KEDGPKLFDL PVQNGMDPKS VKHEYIDDLK  300
NDVKTEPGLD MFBEFSIFNS TMDNLEYTFD SPTLENTNEE TLQVSEACQQ LFEGQNNDSW  360
QLFEGHNNNG ASSSNQDSAT GSVEGTHETS EAREQLSEGR SNNLAISSKQ EDADLPTEFA  420
YPFLKKASCM LGNISAPPAF ASAKYLASAS QASTSVRVTT GMIRIRDVSF TGSKMDWSLG  480
KHGQLNIVLS FGLEQNGDNN SANAHERKGD SRSWFYCLFV WIMVLSLSFK MSSLICPRSY  540
MS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-102	NAC family protein