PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978943.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 579aa MW: 65117 Da PI: 4.2298

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.6	6e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yL++k+ gk++++ ++i++vd+ykvePwdLp +++k+++ ewyfFs dkky +g+r+nrat++gyWk+tgkd++v+ XP_024978943.1 15 LAPGFRFHPTDEELVRYYLRRKICGKPFRF-DAISDVDVYKVEPWDLPglSRLKSRDLEWYFFSVLDKKYGNGSRTNRATDRGYWKTTGKDRSVY 108 579************************9.99***********6448888999*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++lvg+kktLv+++grapkge+t+Wvmheyrl XP_024978943.1 109 H-RSQLVGMKKTLVYHSGRAPKGERTNWVMHEYRL 142 .999***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MAVVLDSLPP APSSLAPGFR FHPTDEELVR YYLRRKICGK PFRFDAISDV DVYKVEPWDL 60 PGLSRLKSRD LEWYFFSVLD KKYGNGSRTN RATDRGYWKT TGKDRSVYHR SQLVGMKKTL 120 VYHSGRAPKG ERTNWVMHEY RLIDQELEKA GVVQDAFVLC RIFRKSGSGP KNGEQYGAPF 180 VEEEWEDDEL VMVPKQESAE ELRVDDDDDA YLDASDLEQI LGSDMPEEDG PLPLDYHQGN 240 DVSCADVSSE MIDETENFLV DGGEDQPQDD KEDGPKLFDL PVQNGMDPKS VKHEYIGETS 300 NTMDXDVDYL LDEPFFDAST GDFQFDGTSF FEADDLKNDV KTEPGLDMFB EFSIFNSTMD 360 NLEYTFDSPT LENTNEETLQ VSEACQQLFE GQNNDSWQLF EGHNNNGASS SNQDSATGSV 420 EGTHETSEAR EQLSEGRSNN LAISSKQEDA DLPTEFAYPF LKKASCMLGN ISAPPAFASA 480 KYLASASQAS TSVRVTTGMI RIRDVSFTGS KMDWSLGKHG QLNIVLSFGL EQNGDNNSAN 540 AHERKGDSRS WFYCLFVWIM VLSLSFKMSS LICPRSYMS

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MAVVLDSLPP APSSLAPGFR FHPTDEELVR YYLRRKICGK PFRFDAISDV DVYKVEPWDL  60
PGLSRLKSRD LEWYFFSVLD KKYGNGSRTN RATDRGYWKT TGKDRSVYHR SQLVGMKKTL  120
VYHSGRAPKG ERTNWVMHEY RLIDQELEKA GVVQDAFVLC RIFRKSGSGP KNGEQYGAPF  180
VEEEWEDDEL VMVPKQESAE ELRVDDDDDA YLDASDLEQI LGSDMPEEDG PLPLDYHQGN  240
DVSCADVSSE MIDETENFLV DGGEDQPQDD KEDGPKLFDL PVQNGMDPKS VKHEYIGETS  300
NTMDXDVDYL LDEPFFDAST GDFQFDGTSF FEADDLKNDV KTEPGLDMFB EFSIFNSTMD  360
NLEYTFDSPT LENTNEETLQ VSEACQQLFE GQNNDSWQLF EGHNNNGASS SNQDSATGSV  420
EGTHETSEAR EQLSEGRSNN LAISSKQEDA DLPTEFAYPF LKKASCMLGN ISAPPAFASA  480
KYLASASQAS TSVRVTTGMI RIRDVSFTGS KMDWSLGKHG QLNIVLSFGL EQNGDNNSAN  540
AHERKGDSRS WFYCLFVWIM VLSLSFKMSS LICPRSYMS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10500.1	1e-130	NAC family protein