PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978476.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 315aa    MW: 35343.4 Da    PI: 7.9586
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978476.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +v+++G+g+W+ ++   g++R+ k+c++rw +yl
   XP_024978476.1 14 KGPWTPEEDIMLVSYVQRHGPGNWRQVPTNTGLRRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.32.2e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T +E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_024978476.1  67 RGDFTHDEETMIIQLQALLGNK-WSAIASYLP-ERTDNDIKNHWNTHL 112
                      899*******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MGRPPCCDKM VVKKGPWTPE EDIMLVSYVQ RHGPGNWRQV PTNTGLRRCS KSCRLRWTNY  60
LRPGIRRGDF THDEETMIIQ LQALLGNKWS AIASYLPERT DNDIKNHWNT HLKNKLRKLY  120
DHDHDRIPSS STSSSSSSSH HISRGQWEKR LQTDVHMAKQ ALSDALSLDK PSIFLDNFPA  180
PQPTSSYNTS TQTTTYASST GNIANLLKGF MKNAPISSKS SSDSSTCKTT GIDSSEGFES  240
LLGFDQSFGS PNGSDLSLSN MSPKESKPEL IGAQLPFTMF ENWLLDEAGG DDVINQRKTD  300
LTHFAFDQNP DHFRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.14e-95MYB family protein