PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978385.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 402aa    MW: 45782.2 Da    PI: 6.921
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978385.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.14.5e-98274004374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshlt 97 
                     lL+e+A+av+++++++ ++l++ l+el+sp+gd++q+l ayf++ L + +++s++++y++l++ +++ + s e++  ++l f+evsP+ +f+h++
  XP_024978385.1  27 LLMEAAHAVAEKNHHRLKHLMWLLNELSSPYGDTNQKLSAYFLQSLFTCIMDSGDRCYQILSSAADK-MLSFESTRNMELkFQEVSPWTTFGHVA 120
                     79********************************************************999988887.6777777777778************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvak.rled 188
                     +N aI+ea++g++++HiiD + ++++QWp++++a+a+ ++++p+lR+T+v +++      ++ ++e+ +r++kfA+ +gvpf+ nvl+++ +l++
  XP_024978385.1 121 CNGAIMEAFNGKTKLHIIDVSTTYCTQWPTFMDAIATGTDQTPHLRLTTVIAAKFCgagVQKVMREISHRMEKFARLMGVPFKLNVLHHSgDLSE 215
                     **************************************************99665489999**************************8888**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.....sFlerflealeyysalfdsleaklpre 278
                     l++++L+++ +Eala+nl     ++       +++rd++L+++ +l+P+++++ve+ead+n +     +Fl++f e+l+++ + f++l++++p++
  XP_024978385.1 216 LNMKRLDIQDDEALAINLNGTFRSVC------SHRRDHLLSMFHGLNPNILTIVEEEADLNMGsfngfEFLKGFQECLRWFRVYFEALDESFPTT 304
                     *******************9888886......55699********************9998886777799************************* PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                     s++r ++Er   gr+++n+vac+ +e++er+et++kW++rl+++GF+pv+ ++++ +++ +llr++  ++  +  e  + ++l Wk+ p+v++Sa
  XP_024978385.1 305 SSQRLMLERS-AGRAVMNLVACSPEESVERRETAAKWSSRLHACGFSPVRCRDEVSDDVVALLRRYReGWSTNTAETVAGIFLRWKETPVVWASA 398
                     **********.********************************************************6676788899999*************** PP

            GRAS 373 Wr 374
                     W+
  XP_024978385.1 399 WK 400
                     *8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    
MDHHQQYFSP PPHHHDSVSA NTWPSVLLME AAHAVAEKNH HRLKHLMWLL NELSSPYGDT  60
NQKLSAYFLQ SLFTCIMDSG DRCYQILSSA ADKMLSFEST RNMELKFQEV SPWTTFGHVA  120
CNGAIMEAFN GKTKLHIIDV STTYCTQWPT FMDAIATGTD QTPHLRLTTV IAAKFCGAGV  180
QKVMREISHR MEKFARLMGV PFKLNVLHHS GDLSELNMKR LDIQDDEALA INLNGTFRSV  240
CSHRRDHLLS MFHGLNPNIL TIVEEEADLN MGSFNGFEFL KGFQECLRWF RVYFEALDES  300
FPTTSSQRLM LERSAGRAVM NLVACSPEES VERRETAAKW SSRLHACGFS PVRCRDEVSD  360
DVVALLRRYR EGWSTNTAET VAGIFLRWKE TPVVWASAWK PI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-162GRAS family protein